API Reference
=============


mepylome.dtypes.idat
--------------------

.. automodule:: mepylome.dtypes.idat
   :members:


mepylome.dtypes.manifests
-------------------------

.. automodule:: mepylome.dtypes.manifests
   :members:


mepylome.dtypes.beads
---------------------

.. automodule:: mepylome.dtypes.beads
   :members:


mepylome.dtypes.cnv
-------------------

.. automodule:: mepylome.dtypes.cnv
   :members:

mepylome.analysis.methyl
------------------------

.. automodule:: mepylome.analysis.methyl
.. autoclass:: mepylome.analysis.methyl.MethylAnalysis
   :members:

mepylome.analysis.methyl_aux
----------------------------

.. automodule:: mepylome.analysis.methyl_aux
.. autoclass:: mepylome.analysis.methyl_aux.IdatHandler
   :members:


mepylome.analysis.methyl_clf
----------------------------

.. automodule:: mepylome.analysis.methyl_clf
.. autoclass:: mepylome.analysis.methyl_clf.fit_and_evaluate_clf
   :members: